Check the download page for information on how to download antiSMASH and the install documentation on how to get antiSMASH installed on your system.
This is a new minor version of antiSMASH, with a couple of changes compared to the 4.1 series.
Main new features include:
- Ported SANDPUMA to Python. This hopefully will fix a lot of Perl-related errors.
It also includes a number of performance improvements and bug fixes. See below for a full list of changes.
Kai Blin (19):
Bump version to 4.2.0dev
output/xls: Use the first record ID, not the last, for filename
output/html: Fix secmet link colours
scripts: Add a script that checks all available secmet classes have an entry in secmet.less
hmm_detection: Remove trailing whitespace from cf_fatty_acid definition
output/html: make sure all available secmet classes have an entry in secmet.less
output/html: Fix glossary links for cluster overview pages
Dockerfile: MAINTAINER is deprecated, use LABEL instead
scripts: Remove outdated/unused files
clusterfinder: Disable unused PNG plot output
hmm_detection: Crash on and fix mismatching profile names
lasso: chore: Strip trailing whitespace
lasso: Use correct regex in re.split
sactipeptides: Fix scoring of CxnC motifs to match the publication
hmm_detection: Clean up Lant_dehydr_N/C confusion in profiles.
requirements: Pin to a version of pandas we can install working wheels for
requirements: Add pytest as a test requirement
download_databases: Exit with a non-zero exit code if errors happened
Bump version to 4.2.0
Simon Shaw (14):
sactipeptides: append hit details to the right list
utils: support piping args in execute()
sandpuma: converted perl to python
sandpuma: use a uniform representation of 'not applicable'
sandpuma: removing more direct system calls
sandpuma: further cleanup and tests
sandpuma: fix errors when no blast hits and misparsing phmm
sandpuma: cleanup and improved testing
sandpuma: bring in Marc's fixes for some mispredictions
sandpuma: remove typing import
sandpuma: remove unused imports
utils: replace ambiguous amino chars with explicit unknowns
utils: trim unusable tail from extracted sequence before translation
Merged in sisha/antismash/translations (pull request #146)
Zach Charlop-Powers (1):
add info to the MANIFEST.in